Full Metal Alchemist - Science vs Religion

The show Full Metal Alchemist has many themes one of which seems to be science versus religion. In some episodes religion or religious characters are involved in the plot. One of the protagonists, Edward Elric clearly does not believe in organized religion and sees it as a scam while his younger brother Alphonse is not as judgmental. Do these characters change perspective over the course of the show? Does the show have a clear stance on this issue?

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